Scaffold JGI12053J15887_10003857

Overview

Basic Information

• Taxon OID: 3300001661
• Scaffold ID: JGI12053J15887_10003857
• Source Dataset Name: Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7617
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12053J15887_100038576	F006952	N/A	MVVQENLATTYLREGQVIGPLGSANREIREADRLDQQRRRARLAEPRRLTDDLLHHLEELNLDGVGTVPDGYEPALAELREQLEGLARVRPRLIERLQPGTRTAELIDTVFIIQEIIAPPRLPSGSVALDDT*
JGI12053J15887_100038577	F004349	AGGA	VKTHTGLVVAISALVVAGCTNPAAGPAKPPTAQEILAKPDTANVKDGHFTLVAHIVSGSVAFDATGDGIIVVKPQQASRFTMQTTIAGQPLKFEEIIIGGKEYDLSPDNPRWTVKPSTNSSNPSSFKGTDAVYLGEETLPQGKAWHVKAKDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNMGQTVSAPPASDIQQ*
JGI12053J15887_100038578	F004003	AGG	MRIAAAMAAVGLLAACGGPGAPLGPPSAKDILSKPLHANLSDAHFLVSGKFVSPSPGVSVDVHGDGALVYKNAGAGRFKFETTVAGQKVSYQDISVNGVDYTFVVPGNGKWMAKTTTSGLGRDSFTGASDFAYVGEENLPAGKCWHAKAKDKDGNQFDGWIRESDGYPVKYEITQQGNALTLSFDKYNTGESITAPPASQVVQG*