Scaffold JGI20274J16320_102212

Overview

Basic Information

• Taxon OID: 3300001652
• Scaffold ID: JGI20274J16320_102212
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 567
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Allochromatium → Allochromatium vinosum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.550409
  • Long. (^o): -72.180244
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038262	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20274J16320_1022121	F038262	N/A	LDFDAILPAASIVGSSLIEGLFMTGVVVALASFLAAQVRPPWLRILILLSGALALLGGGWGSPADLAKQFLARLILLAVLAFGVQRLMRLNLLGCFLIVAGTSIFAGAAELLAQPDSFYRANGYALLLVLALFFAWPFAAWRLRAAAASS*