Scaffold JGI20277J16323_100974

Overview

Basic Information

• Taxon OID: 3300001647
• Scaffold ID: JGI20277J16323_100974
• Source Dataset Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 723
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location

• Location Name: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.550409
  • Long. (^o): -72.180244
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004082	Metagenome / Metatranscriptome	454	Y
F055935	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20277J16323_1009741	F004082	N/A	KHCRDPWLRMGSVVGMTFPLVGQPGHGRTAFVRRQPVRIVDGRVEGGYTDVFEFICPGCGDNPYVDYSEVPSRLQWLRGPLTLEAALEAYDKHLAPLPGPNGDSAGS*
JGI20277J16323_1009742	F055935	GAGG	MGALFILCAIFVGLAVYRSGEARARWQSLRASRTTARNQRNTAWRHAGSAALYVVGAIFFLFIVLKLLK*