NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI12635J15846_10135102

Scaffold JGI12635J15846_10135102


Overview

Basic Information
Taxon OID3300001593 Open in IMG/M
Scaffold IDJGI12635J15846_10135102 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1717
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062584Metagenome / Metatranscriptome130N
F074603Metagenome119N
F104806Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
JGI12635J15846_101351022F074603GAGGMLQFPGPVPPGEIPPPTCFEQFILCVALVAISTALLSFFLPRPLFCKLFKIAFPFMPERIGDDDAKD*
JGI12635J15846_101351023F104806GGAGMPKISLKERKKLDLXHEXRKAQLRKKYPEIHGKKLDYVTHSFEDNDGGGWLYINLYFTDGTNFSMDFSMNNPAIVPRCIEYGDMSTGDYKNIRTYYYRREKR*
JGI12635J15846_101351024F062584GGAGMTEIDDPEVLRREIRTMLGKVTDRGSLIFFQWLLRRVLANYPIPGDEELCALHQAFIRMHATFRAKKKPTKEDMELVAKWTEGDAESMGRALGRAVKFFREKRGMSRLQLAKKARLPIRAILAIERGRVFDLSPVIDNLTVGLSVEAGELTDKLLDFEKDDKS*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.