Scaffold JGI12635J15846_10005781

Overview

Basic Information

• Taxon OID: 3300001593
• Scaffold ID: JGI12635J15846_10005781
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10659
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001995	Metagenome / Metatranscriptome	607	Y
F033169	Metagenome / Metatranscriptome	178	Y
F053582	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12635J15846_1000578110	F053582	AGGA	MRKSEVLRALQTEIQNHNLSTFMHEQHRVVMTGCTFCRQHFGTVEQFKRHISXDVLPPLLDKLSTEHQPGCEATAWPG*
JGI12635J15846_1000578112	F033169	AGGAGG	MKMRISALLVFVLVVTLVPATLPQTESTPTIYTYVSQFQVPRANWAAYSEDSEKSLIPVLEKSLADGSIVSWSTSETVVHTSDGYTHGAAWSSNTIAGLLKVLDEIRKSAPRPGQIAATKHEDLLLQSRMYHNGTGEPTYLRGVCSLAKPDKPENYTAMLKKLLFPTFEEQLKKGVATYYGLDEQYVNTSAPSTRCLIIGYPNAESIDKWATAINTTMSKWSPAEREEFAAASVSDSRRDFLARITHSGHK*
JGI12635J15846_100057813	F001995	GAG	MLAEGLWAEVKVGGEHLHLFAEHNAQGMQASVYNVNAKNWIAPSETVDDIQQGITRAMALQRFISNALPA*