Scaffold JGI12635J15846_10002389

Overview

Basic Information

• Taxon OID: 3300001593
• Scaffold ID: JGI12635J15846_10002389
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16413
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010268	Metagenome / Metatranscriptome	306	Y
F020407	Metagenome / Metatranscriptome	224	Y
F026653	Metagenome / Metatranscriptome	197	Y
F072557	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12635J15846_1000238914	F026653	AGGA	VLLRLEAFVFFFAMMLAVTLEGACVYWMCGYPRLSATTEGSHNFVGQWTGLALPQGWLLGALLVLIYRVTAMFVPPRRWTDNEFLQNRRDFLRLWRWAMALVGMQGLTLFLGRAATAL*
JGI12635J15846_1000238915	F072557	GGAGG	MLRDDLQKRPDIGFRRTVADHLLEPLSPFDANSVRRPQRWFVLASIVLLAAVGSVVYFNFWN*
JGI12635J15846_1000238918	F020407	AGGAGG	MVKQRFLTHFKPWLFAVTKVVGLIVGYQLFNETRTYLQYAPLNIVDVVVAAIVALLAIGLLCGLWAWGEWCWFKLRSLRRFCSELKQAFNNHSRPRTVRTSRSVAGTMV*
JGI12635J15846_1000238919	F010268	GAGG	MATMIASPPDEKASQSSNRLASKENRRARSAREEETMSGARFFLPKSGANGHAPELGREFSNEGEARVEALKLGVTYYSLQEWRPVADFAGKNPELKREPVTRKGTG*