Scaffold JGI12635J15846_10001945

Overview

Basic Information

• Taxon OID: 3300001593
• Scaffold ID: JGI12635J15846_10001945
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18033
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024591	Metagenome	205	Y
F033926	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12635J15846_100019451	F024591	N/A	MNRPSRFLLIAMSAAFGIAAFGLLLGMCYDLYLVSIRHVQLENVLGNSIPYNKILGGFGILGMVLFFAFLFS
JGI12635J15846_1000194516	F033926	GGAGG	VKTVAVVLVALLFGFTDMGRSTEKKPVTPYRAESSAYVVKGKDAWTYVTENRSFRFAEVLGDEGNNYEAVLLLEETYHNERTDGMEGVRGNATVKAWTVQHGRQRELRWAFKENGNEGGVRDRFFRVTAWGCCDAPVVYSYYNVLTGKKLYVSNSDLLEVWGEGDGPQAWRYVAFGYAGINDLSRPPQLQYGTDKKVAQRFSVVSSREYYDAPKVLLSKNEKVEKSLDLRGSPMNFTIVLKYQDGVELRVPVEADAIRLDMAQLPKGYSLRAEK*