Scaffold JGI12635J15846_10000276

Overview

Basic Information

• Taxon OID: 3300001593
• Scaffold ID: JGI12635J15846_10000276
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41325
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021824	Metagenome / Metatranscriptome	217	Y
F036945	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12635J15846_1000027615	F036945	AGGCGG	MWNRTCPLCFVRIPWTAALAHSYEISCPACHAPLELSRFTRIFGAFGGIAGACVALHLGRGIFHGLFWAAPIVAAILAFGFVSVLCVLIAGDLVVRPKPAAASFPHLAK*
JGI12635J15846_1000027635	F021824	N/A	MPDQKHPIRAQRLRVWVCVLLAALILYNPFAALYYSHDTIEVHTLQRNRASVGASELQHFSPVQDDIPEADVNLEADREELAAPAGSFVARGFEREVEVPQSDIVSTVWSRPPPLT*