Scaffold JGI12635J15846_10000087

Overview

Basic Information

• Taxon OID: 3300001593
• Scaffold ID: JGI12635J15846_10000087
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63456
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (71.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028918	Metagenome / Metatranscriptome	190	Y
F047269	Metagenome / Metatranscriptome	150	Y
F053414	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12635J15846_1000008738	F028918	GAGG	MLCRPQIRYFAAWILTLATAFLPAAAQPNRDKNTWCYDGGIFLETDGAIPGGACFRVKGRVTAADFFENLKREDTNSGTLFRRANDIVTEFPKRLHLSMSISDIPCDPHMQQTNSRVYLTAEMISALRLNFFWKRALELRPVRGIVESGGEVRPVPWYSHGLEQELPKRFEWLVEFDLPSGGVPLTDNLVLMIYTPDHRLVARGAARM*
JGI12635J15846_100000875	F053414	GGAGG	MHVLRGVLALSLCVSLCAYNLTLYAGGKPLGILTMAYGAHLNASDAFAGLSVFDGESVSTDPEGKLSMRIGGSVITLAEQSAATLQRSGDGAHVDLDAGSVHLRSAENNPLEVHVEGALLRPHGNHSVQAQILMFAPKILQITTRQGSLDFSYHKEFRVLPEGQTYRIYLESEDDPRGTSGAANAAEKVGMSTATKVAYFIVAGAGAGLAAWGMHDLIQSNNGMESPAKP*
JGI12635J15846_1000008752	F047269	N/A	MLSLKEVVDRYSALAKQWGDPVALDAFGLDPEETIKLFTSLDEDYHISRFVNFSMDHGRLYLIGGNPSTHIRIDASIRSLL*