Scaffold JGI12635J15846_10000070

Overview

Basic Information

• Taxon OID: 3300001593
• Scaffold ID: JGI12635J15846_10000070
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66580
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (75.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006229	Metagenome / Metatranscriptome	378	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F033455	Metagenome / Metatranscriptome	177	Y
F084509	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12635J15846_1000007012	F007488	GAG	MKIRAYEESDLEALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEDGKGIAGAALLRLTAEAYLLLDPEAGSPRERWQWLLGLHEATRRDALARGLEDVHAWLPPEIAKKFGKRLTRLGWVRDDEWTPYCKRLEPTFAVVNGKGT*
JGI12635J15846_1000007016	F009917	AGGA	MGTSGWTYLVVVFSVGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNVIAERQGIKLEEMPSVNYVDMRNGGRLR*
JGI12635J15846_100000702	F000512	N/A	MIQVIRERHETPENVARRLCLAGGMNRYGEANYRVVWGWNRLGWIGGKFEDRDSAGNLVREVVELRWEPKYPQVNRWHVERWVPAEAYGSPRAWYAQTTERADGKSVAALGPYPERGEYEHCYTLQGPRGEFVQLTPTIAEHVARAIEWARGRDRASQRAKLYEREAREERAYEEWAFEVMDDGAPAMSGAPMVAVG*
JGI12635J15846_100000703	F000739	GGAG	MRASRVEVWLKGMLAAGVSGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEG*
JGI12635J15846_100000707	F006229	GAGG	MNKQSDVVSLVNISTQKWPPRHRTYFGSLTIQSPEAGAAYAVTPVRACTSLMDLGDKRTMEIRLSAQEIAEDLVREINGDSGEGSYHGVFVAAGPEPTKEELAEAQKKLEAFQRRLVETADLEWERSHNMMFITDLERRAARELRLEKPWLYDPKPMADCPACGEKIRPGVAVCRTCGAILDREKAAKFGLAEREEKSGEVAKPVDKKPTREK*
JGI12635J15846_1000007070	F033455	N/A	MKILVQHFRVSMAGANSIVEFEAIVSHKQQVEIVAQLSRQGVITEVIPVEGHHG*
JGI12635J15846_100000709	F084509	AGGAG	MPSYGNVLPPVSVGFGESAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSAAPGVISVQFQTADTDIDAAYIQEGAAISNVNTGNVTRAEFPDVVAKFARILIATLPNNVTATAKISA*