NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Draft_10166268

Scaffold Draft_10166268


Overview

Basic Information
Taxon OID3300001592 Open in IMG/M
Scaffold IDDraft_10166268 Open in IMG/M
Source Dataset NameWastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2:
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)906
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameMedicine Hat, Alberta, Canada
CoordinatesLat. (o)50.033333Long. (o)-110.666667Alt. (m)Depth (m)800
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033445Metagenome / Metatranscriptome177N
F058173Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Draft_101662682F033445N/AMLWATPLLANDVCFSEPDASXMVVELERGXVCEQQVIQYEVSVKXLSXQIEXLKNQVDTMSKKFDETIKQLDTERKIADEKDKARLEEIKTAGKPQWTMLFGGFGAGALLVGALVLLL*
Draft_101662683F058173AGGAGMKMQYWIALGIGVAIIIIVAAFFWGRYHPDPDVIGRLTDQIRLETIKQYDQRIADLNSQLRVSQTAYIESQKRYDTIIKKIKELKDGKDNIKPPVDSVELNNRFNALGYTPTGK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.