Scaffold Draft_10102879

Overview

Basic Information

• Taxon OID: 3300001592
• Scaffold ID: Draft_10102879
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2:
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1343
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Medicine Hat, Alberta, Canada
• Coordinates
  • Lat. (^o): 50.033333
  • Long. (^o): -110.666667
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023098	Metagenome / Metatranscriptome	211	Y
F039036	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_101028792	F023098	AGGA	MDERRQXWTCGAHHXLVESLRDINQKLDGMIVXQIAYAXTSARIEEKXEQIERIVTNGLSHNVANIAKRLDIFCEEVKKRLDELEEFKWFRLPITRLRDSIFWFILKIALAGGAIYLVIHYSGDLIRGITK*
Draft_101028793	F039036	N/A	NCVFWLFRLNDIKEVRKIKSDIKYLSIETLMERFVWKEDVGGDWTPWVMTIIRQSFRDDCDGAAALAKWWFKEHGIEAEILNLYSKTEGHAICVTKNRETMVTNERVVDLNPTCWEKEMLEYFGGKYTEII*