Scaffold Draft_10020776

Overview

Basic Information

• Taxon OID: 3300001592
• Scaffold ID: Draft_10020776
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2:
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5040
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Tissierellia → unclassified Tissierellia → Tissierellia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Medicine Hat, Alberta, Canada
• Coordinates
  • Lat. (^o): 50.033333
  • Long. (^o): -110.666667
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021262	Metagenome / Metatranscriptome	219	N
F024321	Metagenome / Metatranscriptome	206	N
F033819	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_100207761	F021262	AGGAG	MSKKYYIKFTTGKELTGTAKEIVTQLRNESRLLAITPRKYAKLLAKSYEMSTGMKLRTWTYNSFVKSLGKSLMVMEFKE
Draft_100207762	F024321	GGAGG	MLEEILTIIAGMAGLGAFTSMLINLLKATGLIKDGQGDKAFKIADLVIFVAVMVIYLTKTPIDWAQVNEWLVLLTALFGYVVSVFSGSFTHNTIKGTPLVGYSYSEKKLKE*
Draft_100207764	F033819	GAGG	MDASEPKQSRVTNTAIQSQLVELSVRLTRMEKDLQEIKSTLSSSGEKVSSLEKSEAGRYPLIDRRLDNLEKRTDEHDIELKELVKISQSLANSIKLLNWVTGLVGGGVIAWLVAQILSLIGV*