Scaffold Draft_10008654

Overview

Basic Information

• Taxon OID: 3300001592
• Scaffold ID: Draft_10008654
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2:
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9539
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Medicine Hat, Alberta, Canada
• Coordinates
  • Lat. (^o): 50.033333
  • Long. (^o): -110.666667
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011936	Metagenome / Metatranscriptome	285	Y
F048174	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_1000865410	F048174	GAG	MSDKGQLNNKDVQSHSEVVEALLKGEIERLKEDLDRLHRERDSFQRQCAVMSEENAIWEAESKRLDWMVKNRGRIEWEFGGNCYVTFIHKNDFKATLGSDDTRVEIDRAMEMCK*
Draft_100086542	F011936	AGG	LLEQLHETRLQKLEQGHDMLSRDYSRLNDAIVKISESLTALVVIQEQNKSIMQHVERNSTLIEKSSSRIDEIERHQPQLLELRTWVLTGLGLIVSAVVVAMIALVIK*