Scaffold Draft_10004455

Overview

Basic Information

• Taxon OID: 3300001592
• Scaffold ID: Draft_10004455
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2:
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15029
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (17.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Medicine Hat, Alberta, Canada
• Coordinates
  • Lat. (^o): 50.033333
  • Long. (^o): -110.666667
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035298	Metagenome	172	N
F057199	Metagenome	136	N
F061652	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Draft_100044552	F061652	N/A	MTNLMLYINDLPVGCLLSNGLSESISFIKTCKSTQEMGQKQLGQLHSYSVNFEAVYAVDASVISWNELKDLGRSRLLMDWSMINLETDEGDAGEGFLENLEITGVNEDFVKFAGTITGYGPIVDAGIEYFVWAQSPGNFVDNGGDEYVFVN*
Draft_100044556	F035298	N/A	MPDDFYALTWNQYILTCQGFFNREKKEWERIGWATWNGMRVHVNKGMPTYKKFMSFIYQDEEIKDMDKIKEQMNKAMIKYLENARN*
Draft_100044557	F057199	N/A	MEGHLTYKIGDENKQFFFGNYALEQTLTHFDASVSDLSDLLGKQLLPFMRMFMYHAAAYPIIKKGEVVDFTPFDIHEWIDQAGGSGGDLIMVVSKEIFRALGLNTETDQPAQKKSEVKS*