Scaffold JGI24005J15628_10167869

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10167869
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 647
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020817	Metagenome	222	Y
F034914	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_101678692	F020817	N/A	MIYLILKERHYSNIENSYDIVASSKDIEAINDKLKGYQLINDDKQNSYSIVRYESPLLLTEEVA*
JGI24005J15628_101678693	F034914	N/A	AEIEVEKTPEGKKVKELKLYKQSAINSVFECGVPEQLNIVLEKVLNGVGIVWNKTKALQLENKQYN*