Scaffold JGI24005J15628_10148397

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24005J15628_10148397

Scaffold JGI24005J15628_10148397

Overview

Basic Information
Taxon OID	3300001589 Open in IMG/M
Scaffold ID	JGI24005J15628_10148397 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	716
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010275	Metagenome / Metatranscriptome	306	Y
F045712	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_101483971	F045712	AGGAGG	MPNYNIISQGSTKIAKSNKIQDKYFSRIVYLAPDDLADGKNTLCPYAKIAKCSEAC
JGI24005J15628_101483972	F010275	GGAG	MSNEINSTVMDNMRDSVHELWVIEGRPDLEDDCLQYCYDNIDRPIPITMIEFLSQHCGQAVSSADYKQMAKESLNAQRNHYTKED*

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