NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24005J15628_10139287

Scaffold JGI24005J15628_10139287


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10139287 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)753
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004856Metagenome / Metatranscriptome421Y
F015812Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_101392872F004856GAGGMSDWIEGTKPKKIEARYSAYLSWDLDDYXIDWDDIXDYDICRGXLEITFKDGTKKVMDNFQELSVDTKHGLEEVLVLDEDWSQVEGLN*
JGI24005J15628_101392874F015812AGGAGGMSKTLYKRLEEICAREYVVNKLSEDKFRTFVDFLYDDIRTWDRPTDVSDVDVIHRIEEHLSHMVSRRLSDTHIGTNH

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