Scaffold JGI24005J15628_10096123

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10096123
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1006
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020601	Metagenome	223	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100961232	F020601	AGGA	MATIKSLSKCFKEVKRLTGDLLSDAQINVILDEAKIKINENKFQGAEVKAEEILSKEIIDKFEYEQVLKKRTLAESNMKALERFESLTDAIETSGGKISPLEAISGYLVGMQKFSKITRDSIGLKQTTLENAEITKFVNKINKLGKNTWNDLNDGKLDLEIMQEMIGENTGIKSARDIAKVLKASQNSWRLRLNDLGANIGELDDWITRTTHDTDKMSHANKGSRLLADNRLAWVEYIQTRLNLKRTFPNVND