Scaffold JGI24005J15628_10065597

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10065597
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1336
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F016757	Metagenome / Metatranscriptome	245	Y
F056143	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100655972	F056143	GAG	MSKMSDWAIQLEEDFWDTANKVVGGCEHFGQFVQEMQPHRDWLGTHNDQEYCERLQDAWDNYWSDKR*
JGI24005J15628_100655974	F002733	AGGAG	MIKTDKVWLQLTRTEANALMVMLDGEMENRFLFQVLDIKEWEQLDLEAYKILAFHKYKTWYAENCDD*
JGI24005J15628_100655975	F016757	AGGAG	MLPRTWEVKVEATTTREVIVHADTEYEAQIKAQIDMVGLVGGENTKVLAVKETTDD*