Scaffold JGI24005J15628_10038067

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10038067
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1952
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062240	Metagenome	131	Y
F076876	Metagenome	117	N
F081863	Metagenome / Metatranscriptome	114	N
F096042	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100380671	F096042	N/A	KEVYIQAANGKFGFKVSGKGTYIWTSEEAENEAAMWKAESNLSKRCFKKEVKSYELKVVGENNFWVITELDGTVIVIDTIEYTMAYYMRARTKKAKVGDWKLPHKCYGYYTDSSCVAREEADLAEMYSTDNLDWMGEKDSYYRWRANFVSLIKETFK*
JGI24005J15628_100380672	F076876	GGA	MRNTNRFYAGLITMTLGFSLISNGSAEDKNFLWESDGSLTIVDGAKDSGYIIEDGEVKTYVIPSDTEKTFIQDGPSGKLIVCDPAIGCY*
JGI24005J15628_100380673	F062240	GGAG	MTKDEKDKIMKQLLADAGYDYEPKPRKDGDEIWTSCGQDVPKDLKPISKETKDKISKSRRSEGLKSLLDKN*
JGI24005J15628_100380675	F081863	GGA	MLILIVMRITPNQFKEIMRFFDAGDYESRKKAIDMLYGGFSTHFIIKIKREFMHNNYDDDTAEDILHDVFHSLLKKRTKPSSPFAISAWLDTYVFNVARDNLKKAYRHKEFSYHTETKSDDDAISSVVDETNTKDSMMISECIKQVMEETQKD