Scaffold JGI24005J15628_10032738

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10032738
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2146
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013522	Metagenome	270	Y
F040345	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100327383	F013522	AGG	MINQQILKRIHKLSKLCEDTEPTSKELMYMDKLFTQDLIDVDKMYLQIKNNAYSRDELIDIMKECNWIWKKRMKVKEIGWTEYNDVGRRIEESLRANRKIQAIKLYRQHKIDNGEDCSLREAKDYIDKLQIKMGLD*
JGI24005J15628_100327385	F040345	N/A	MKNTEHEDIITYILIGIGIGVGIGFVLKIFLDTYIII