Scaffold JGI24005J15628_10028860

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10028860
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2321
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F003678	Metagenome / Metatranscriptome	474	Y
F021434	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100288601	F021434	N/A	NAGFGSGFGSFLSDVGSNIINPLTGIFSQVRPFISQQSQGQPAIPTRTNIGGQESQQSGTQQAFIGGVPNILGQAARFLGSRTGQIGTGIVGGIGASMLSGGGGSMRITRKMKSQYRAVLNLAQGDYDAAANMIGVSTDMFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRAGTTLISNK*
JGI24005J15628_100288602	F000613	AGGAG	MPLVKKRLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNSEFSKNASVSALVTGEPFGWNGNYAMNDMVTQGAVRNRPVITFTNGTSATRTVDVAVXIGG*
JGI24005J15628_100288604	F003678	GGA	MLYAPLFIASLSLILCFYACVRVGHLINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMLQLMQRQPNQPINGQIKNVGG*