Scaffold JGI24005J15628_10027975

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10027975
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2367
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001416	Metagenome / Metatranscriptome	699	Y
F002192	Metagenome / Metatranscriptome	585	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100279751	F001416	AGGAG	MPIIKRKLSIASGATSDNVFANTTYQTVDPGTRLVVAAAVDTAGSATADTTMDFNVNNAEFASDCSVSTLVTGEPFGWNNTGYVLNDMQTVGATN
JGI24005J15628_100279753	F002192	N/A	MYQVLLYSSLICSVFSLLLCLYACARVGKLIKATNGLEWDAIANITGDLATTKKTIQTLNNRINGMHSPKLQEQELMMQLLKNPPNQMSNGKLNNVGG*
JGI24005J15628_100279755	F000754	N/A	SVSTLVTGEPFGWNNTGYVLNDMQTVGATNRPILTFKNGTAGTRLVEVAVFVGG*