Scaffold JGI24005J15628_10025834

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10025834
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2489
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030882	Metagenome	184	N
F081764	Metagenome	114	N
F092717	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100258342	F081764	N/A	MEKRIRKVADCYTKFGLQHTSKSTACLKHSDRFFKKILLPKETKNLNNASFEGGTIIHKIVQISITKKIDLEDVINSDEIQKDIDSYLAFNDKDKYKFKFIVRNLKSTAQNHLDNIAELEPQEFKAEIEYTAWLPNVDTFWLMYLDMVGKKNFGDFKNCFGTVKLSPLKNPDKKKPVKKKTDKPVIDNRIDDWVYTNKSVPKRPYFSDVMQISLYKNSCPLPPFLSYASSTDRKLFTENNCDELKQENLDQAIKILQVYEKAWQKKLEIADGDVEKLAWLCVPDVSDIKKNTFMWENVPDEYKQKFLDVYGL*
JGI24005J15628_100258343	F030882	GGA	MDFKGLIDHYQTLPKSELIEKLVFKNAKLLTQENVIEKLEDEQKRLEEINQGHQKLNGELMQEIKQSKQGEK*
JGI24005J15628_100258345	F092717	AGGA	MAEYSNKISLWKRKPRETDVAGKSYPHYQGNINIDGVMKDCAVWIQTDKKNPNQPDMSGTVSEPYKKPTNEEAPF*