NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24005J15628_10020286

Scaffold JGI24005J15628_10020286


Overview

Basic Information
Taxon OID3300001589 Open in IMG/M
Scaffold IDJGI24005J15628_10020286 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2891
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005315Metagenome405Y
F007006Metagenome / Metatranscriptome360Y
F039351Metagenome164N
F060351Metagenome133N

Sequences

Protein IDFamilyRBSSequence
JGI24005J15628_100202862F005315N/AMFIIACGDSYTQGEGLEKQTQAYPYLLSGNITNFAQSGASEYLITTQIEQAVKLKPDLIVVGHTSEYRWEVWDARNKCQQGFIVANHVLRNEKYYRNWILSEQILGNTRNIKEHKAAWHAAGMLYFSDIELVQRLWSGAVAKQILLAQRANIPIIHHCCFPHLQLLLAELTDDYVEFHLDLEKHKDMAPDNSHAGAESHKKLANMIMYKIS*
JGI24005J15628_100202863F039351AGAAGMYRIMVTGDSWSAGEWDPTLTPEETRAFAEKYSISRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEIGFDFVIYVKTCATRDFKHLTPEHHIAYTTTDLFEKIKLVKELEYKVLEQYKHKLILLGGIEKIEPDFDCYFKIPSITEFFYPDFEDTTIFGDYTHFEKYSDGDKKGAMKLWKLWEHKHNFWKDHPEYFASATDQVHPNRKATKALADFIHNHIS*
JGI24005J15628_100202864F007006AGGAMEVALKTELRKEISRIVELMIQGEAIRESINELKKDIKSEYDIPVATITKIATIVRKENMDEEQEKWEEIKEYVEACM*
JGI24005J15628_100202865F060351N/AMTTKYDDMVWKILCGMPIEVFDEDDDTVWENETWELVKTRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTVSDDITKLSHDIFNNILDKFTEDKLIRKRPENIRKTFQLIN*
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