Scaffold JGI24005J15628_10016361

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10016361
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3291
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100163613	F015102	GGA	MESDDDAEDTNTPFDDVTHWVGNLPRKGTDSDERTNKRNTRGKTKSNFLRKKLGLEEK*
JGI24005J15628_100163615	F027536	AGGAGG	MRVSXVVPIDRVLNECRRXADDAWWDGKDDEAKLHEQEVKLYEQDKQEGILWVPNF*
JGI24005J15628_100163616	F029123	AGGAG	MSYEVWFGKNGKWFGYHSFKHRMDAVRYELRYQSVFKDLTVEIRRREHASQ*
JGI24005J15628_100163617	F006217	AGGAGG	MMIELLLSVVEDTNQIHKYCMSKHDHWTGRAACVQELRHAQRKMEVEDLREFLKANPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGTDKVKKEKC*
JGI24005J15628_100163619	F005813	GGAGG	MKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPNHEAMSWFRWAFDCMLRGQYKDAEAMLYKGLKDDHSTQDGG*