Scaffold JGI24005J15628_10016129

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10016129
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3316
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008236	Metagenome / Metatranscriptome	336	Y
F019643	Metagenome / Metatranscriptome	228	Y
F052546	Metagenome	142	Y
F060890	Metagenome	132	Y
F065685	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100161291	F008236	N/A	AWCDSDEKIATKRPRSKKKADQWRSDLPKMVILGDDRYVTCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH*
JGI24005J15628_100161293	F019643	GGAGG	MAKYYIKSGTLEIIFSTKKRDYDACRTAIHECNANDELDEYMYIDERGYRDAFNADQTTSVVHTEDILRKEGYIK*
JGI24005J15628_100161294	F060890	AGGA	MIDSMKLTKHDYEMIADIVDSYYEETVELQKDHYLDDDTDYFKKLEYLEELIDKVVYMIGVLSAEQ*
JGI24005J15628_100161296	F065685	AGGAG	MKPVVGIGSNTKYGRVLKILRDGVVVENGRGERETVSFRKIEKTLKGFEK*
JGI24005J15628_100161298	F052546	AGAAG	MKRIVRPTPMIMKSYNTAAILTLVLTSLYSGCTIIPNKNVLSLNKTIELDERAVEDINVGLRFEWIR*