Scaffold JGI24005J15628

Basic Information
Taxon OID	3300001589 Open in IMG/M
Scaffold ID	JGI24005J15628_10014497 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001589 Open in IMG/M

Scaffold ID

JGI24005J15628_10014497 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3531
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3531

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042021	Metagenome	159	Y
F043087	Metagenome	157	N
F101910	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100144971	F042021	GGAG	MNFEEIDKQESMWRDLVSRGEILSLQLLAQEAKKDLEKRIASFLLVRKKTIELGYNSFEFRNKTYSTDTETRDKAMYSWSNAKNVSKRRALLAYRKAETNAWIYKTLLDKKKTGLFKKCKNLILIGSGMYPYSMFDIQKKYKHIQQIGLEIDEKRAAIGYDLVTKSPAKDHIKIVTCDGYEYDYSYMLEDDLVFISCDVDNKKLMNKVMETCKAHIFICAPYEKTWLRSLLTSTKISKKDGVTFFLD*
JGI24005J15628_100144972	F043087	AGGA	MSIGFLTQYYRGLGHSQRIKFIAEKTAERHDVVIMDQLFQPPLDYKVPHIAFLGDYKIPDINKVFQFIQQAPIINFRINQFIKTIEKYKVKVLVCEGFPFCRQQFAHEYFRYLAECKKRNIKIIISVRDFPWDEPHHNQLQDWVLYTQNIVCKHYADKILVHGDKELLPLISDRTRLANSIQIIKDIDSLIQYTGYVCDESQPIHKQKNNNIYVSTGLNKDESVVIFKRIAEIAQHYPEHKFIMPIANKYNSIGGRKNKNIYLVEYVPELRNKLTECAAYITYGGYNATVEILKSQVPSLIIPRQSGRKMEQFVRAFTFEPYDFFKVLTMQEFGGIKSVLDKLISGYSPKPFTYNLQGTSNTADILSEIYNEL*
JGI24005J15628_100144974	F101910	AGGAG	LTDYQICEIDIEKSSTAKYLEQNYSCEWGFNQDTNLDPFFHLRACIVNPVKIASGKTIPIPTGIYPALKNPNFRIEINSFTDLVYEQGLALADGISTFEFTFRNEIWLLIKNNSEQAQLIQPTQKIATFSVNYRPRMVLNYVDQIEDIAWKNSSAKSYIQKIKKKISPDIHDVKKEKHPDMDYSRGTIQQYMDGGFATHQLDINEVEGIIRPLQKQETLKKPIGVKSSES*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24005J15628_10014497

Overview

Ecosystem & Geography

Associated Families

Sequences