Scaffold JGI24005J15628_10009875

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10009875
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4421
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F006870	Metagenome / Metatranscriptome	363	Y
F007087	Metagenome / Metatranscriptome	358	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_100098754	F006870	GAG	LLVLSLILTNKASSFETKLSPQGSDKYNLSIKGDAKSSEKNLRGVFQNKVNEICGTRFEIISIKMEYESEEGAKINVLNGTFKCFVKSQM*
JGI24005J15628_100098755	F007087	AGG	MKKLLLIALIIPNFVLAEDFKLVCEGEESTFRNDVLENTSKATRTLQVKDDLIVIDAMTYKSKTFDYGAIKGSSKYVKDDTQIVLETTQVSNECDTALMNVKLNRSSGMIETASKRIGACDGSSFTTSSKFMGKCK*
JGI24005J15628_100098757	F002915	N/A	LLLLTIPVIGQSEETFTNEQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYEACAQTKYENYICGDKDMVEKLEKKAKEAE*