Scaffold JGI24005J15628

Basic Information
Taxon OID	3300001589 Open in IMG/M
Scaffold ID	JGI24005J15628_10002048 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001589 Open in IMG/M

Scaffold ID

JGI24005J15628_10002048 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10451
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (81.48%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10451

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (81.48%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F011629	Metagenome / Metatranscriptome	289	N
F020898	Metagenome / Metatranscriptome	221	Y
F045552	Metagenome / Metatranscriptome	152	Y
F077379	Metagenome	117	N
F087017	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_1000204817	F020898	GAGG	MQKTKVSLNKSIANLTASILSNTANFVMQESTKNSCKSIYKNFKFNSTTKSTSGNETHFTAQMYNNYYCGRLCMLTFKNNAFVSMYTLD*
JGI24005J15628_1000204820	F077379	GGA	MLTQKALTKKLTATLCTTTNTIFVHKNNKAHLQYTVNSEKVIHNANAQQLQAFNSLQSTLMQKTKNFIVNNALVKQLLNN*
JGI24005J15628_1000204821	F003769	GGAGG	MQQLKTITVKTSTKQDSVHMETLYAVIQNCYNNLQVMEADCTSASYFINSANIFAQLQMLYCENETNDYVSLQSVMEVFANNITYYDERSLYEFVVENTAMQKVLLENYVYLSN*
JGI24005J15628_1000204822	F011629	GAGG	MLNTTQVKELVKQRFGGSIKQVYLNKCYSNKQELADKRNMAFAVDGDVYKGVDLTALANEIGCKRVKLHSAFLRGFADGCWLRLQHVNYNK*
JGI24005J15628_1000204823	F045552	GAGG	MQNTDTKFTQCEKDFVVEFLADVLYGLTINNVLSRQEGNGFVRMCDAQEVMQNLEKLYDAHNEDEGDWVAEQVKAIWTFTIDDAEDALKSYDTEYRDCICEQFEDACTDALADEHKKLLDADYATLAERILGY*
JGI24005J15628_1000204824	F087017	AGG	MLKITNTTIEKDGTFGLNTNYTVEGTVTLAMDSIWNYDGKDVVTVENIQMYTHFDDDGNDSNVDVNVTHNATWNIYTDKGFESAISNLLGFDVQFTEQGMQDDGYASMETA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24005J15628_10002048

Overview

Ecosystem & Geography

Associated Families

Sequences