Scaffold JGI24005J15628_10000400

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10000400
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25189
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009291	Metagenome / Metatranscriptome	320	N
F016497	Metagenome / Metatranscriptome	246	N
F022105	Metagenome	216	Y
F037973	Metagenome	167	N
F062240	Metagenome	131	Y
F096042	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_1000040017	F009291	N/A	MLNLFAMTITPDQFKEIMRLFDAGDFESRKEAVSMLYEGFSRHYLIVIKRDFMYNKYDDAMAEEVLQDVFLSLLSKQTKPSSAFAISAWLKSYVFNVTRDRMKKSGFEVLPDDPDLGSDIPSNPGDSTMIEKCMEEVIKECGKDDPEGAELFSKVKVEGYAYSELTNIYGKTVSNLKKIVSEFNTMLKELIQPCLERAK*
JGI24005J15628_1000040020	F062240	N/A	MTKDEKDKIMKQLLADAGYDYEPKPRKDGDEIWTPCGQDIPKEPKLMSKETKDNLLKSKKK*
JGI24005J15628_1000040021	F037973	AGGAG	MKNINKFYTALITMTFGFSLISNVGADDLDLFLSDNSDSGDNSFYKDDGSLVIIRGAKDSGLIVRGTDEGTETEYYVIPKDDGSKTFIYDEGLTVCDSNGCY*
JGI24005J15628_1000040022	F096042	AGGAG	MNVRNKIIKASALRNKVAYIQSANGKFGFKVEGKGTYIYTSEKAEDVSAMWKAESNLSERCIKKEVKSYELKVVGEDNFWVITELDGTVIVIDTIEYTMPYYMRPRTKKAKVRDWKLPHKCYGYYTDRSCLAMEEKDLKESEEKDSYYRWRANFVSLIKETFK*
JGI24005J15628_1000040026	F016497	N/A	MKNKKLENKKLENKKLEEITVQDMMLTPMGCKIVAETAIKSLATQIGKWAEEYPEERENYQADVEVLWRTLWLFNKCDFLFKEPEQKVEDLAA*
JGI24005J15628_1000040031	F022105	AGGAG	MKEDITVDFHITNTKYPIYRVSEWDKYQQYKKTSKRYVRQMPWFKFHARELLQQRRFVMLDADNFKFLVLIMCHASQDDGYLLFEDLVFQFRGILDEGQLKENLDFLVKNEFIQEANTSDFNDSRAFGWHRNNTNESISNNRRYKGNELEEVIGDLIYKK*