Scaffold JGI24005J15628_10000224

Overview

Basic Information

• Taxon OID: 3300001589
• Scaffold ID: JGI24005J15628_10000224
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35799
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (82.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004327	Metagenome / Metatranscriptome	443	Y
F020791	Metagenome / Metatranscriptome	222	Y
F096775	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24005J15628_1000022422	F096775	N/A	MELLFKAIIGGIIIATVSTVSERYPTIGAFVLGIPLASFVSFIFLYYAGVDVETFKTLSIQTIYFVLVSLLFFPIFVYVLPIYGFWIAMLVGTIIISSLMFGLYRFL*
JGI24005J15628_1000022461	F020791	AGGAGG	MIKAIMFMIIGACGAYLYMNPGDVDGMTDMVKEGVNKGATVIQEATK*
JGI24005J15628_1000022468	F004327	AGGAGG	MRKYIEIGTKVDSNHGMAKITGIELCQNGEKYGIDVDKIFTDEKDRCVFDLDNGHWAYGYQVQAI*