Scaffold Draft_10001537

Overview

Basic Information

• Taxon OID: 3300001567
• Scaffold ID: Draft_10001537
• Source Dataset Name: Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34343
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (48.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Northern Alberta, Canada
• Coordinates
  • Lat. (^o): 54.0
  • Long. (^o): -114.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F008026	Metagenome	340	Y
F057745	Metagenome	136	N
F072846	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Draft_1000153716	F008026	AGG	MGRNQGEKKYLVSSKKALKLLGFKSQTSLDQFHEDEGLTCYIVDGIAGQGGRGFAWDKREINKWLRTEGRSNEEWLID*
Draft_100015375	F057745	AGGGGG	MRVTSKLLDDKIHTLNVLLGRPLTPYKEDGSGKLIKGVHGQCIPCPDHFMLDSAYGGFRLDVMAKGGGISVVLDRTTRRELFEQINAMIKGYQLALK*
Draft_100015377	F002390	AGGAG	MKHASQLFPIALQELIAIGEKARKQREDRERAKHGARPRETRACKHGACEEKQAKQLQLEFQTRI*
Draft_100015379	F072846	GGAGG	MRIAAHKQATPKLTSFEVFAYKQIKGYRACMKVLEVEARTPDDAARTGQSFSKMMSYEYSHVRER*