Scaffold JGI12659J15293

Basic Information
Taxon OID	3300001546 Open in IMG/M
Scaffold ID	JGI12659J15293_10013163 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001546 Open in IMG/M

Scaffold ID

JGI12659J15293_10013163 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2270
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2270

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Algoma, Ontario, Canada

Coordinates

Lat. (^o)

46.42

Long. (^o)

-83.37

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005865	Metagenome	388	Y
F009563	Metagenome / Metatranscriptome	316	Y
F028588	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12659J15293_100131631	F028588	GGAG	MKDGINPHGKKQSQSFRWLQEIDQILVVGMKYGPRGTQEAVKRVRRLTPELVPAQVWHRMRHLREKERAKSATPVDWSEAAIDILRYGYRSGGRKKTEAIKSVRALYPGLAGHVVSRFARSQGWLEGEHADRRKGDRRPWTREEEQELFVRAGYEPVKAIAEKLKRSEQSVRFRLKGRAISARVTDGWSLRRIQQTLHVSHRRLQRLIGSGFLRVRDPRVSAISLAEFSRRHKTVALPGMEEEMAAGVRNKSEGYSW
JGI12659J15293_100131632	F005865	GAGG	MPAPKPGPEWVLSGPNPRSDSATESELSKAARSAWPKALAHVRQVHPRNPFDDDGILVAEVWESVLQSVSRTLDRTNGRRGEIRDLEAYLLGSFYHRLRRALKKEQRREEMIHLVSSAQELDLLGRTSHAEQHDLESTLHAREILDRMDAWSRKVWVAREYGYSWKHIGRVLGIPGDSVMLRFRRRMKILRARLSGGR*
JGI12659J15293_100131633	F009563	GGCGG	MKCQWVVGSSFSYTWAVFQIELLASGLSLSSESQSNAADKRLLDILRQGLATEFPNPDRIGCPGNALLKGIAQGKVALTEAELWLDHLGSCSPCFQEFKEFRRQSAIQRRRALMLVATAAVLLFAVGGWLWMRARRSVETSDVAVLDLRERSVVRGQRQSEIGQVPLEISRTTKHLVLDLPIGSKEGPYDVGLLTETGDQVLRATGMAQLHDHTTDLRIDVDIRGVQAGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12659J15293_10013163

Overview

Ecosystem & Geography

Associated Families

Sequences