Scaffold JGI12659J15293_10002683

Overview

Basic Information

• Taxon OID: 3300001546
• Scaffold ID: JGI12659J15293_10002683
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5441
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019512	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12659J15293_100026832	F019512	GGAGG	MRVHRATSVIPLTLTLALAMAMVLGPIGCGHSGSDSSADEGIPGLTSADREAQSAAMAELQRHWRKGSDGWTTAVVSGSPYAPDHFLRQCRALTIKAMVPQDLSESDKLNGFEWVGRAEFESTSCREGGGQAGMVLDGMSNVVVSKHSGQWSQWVDFTPGPLRFAREKGRWQFNWDATYLRGTLPGAQDFANAGVQ*