NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12630J15595_10110579

Scaffold JGI12630J15595_10110579


Overview

Basic Information
Taxon OID3300001545 Open in IMG/M
Scaffold IDJGI12630J15595_10110579 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001773Metagenome / Metatranscriptome637Y
F027131Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
JGI12630J15595_101105791F027131AGGAGMKQSKDRAQEERDRITDIQDLLIERYVEQKEALREGNRCLAIELEFEIKELRREQ
JGI12630J15595_101105792F001773N/AGIAEAADSGLLAQTAGFLLGNAHRCGVPTDRVAHAEKVIHRLIGAASDDPTEEAAANSRFAETYRASAFPDQDGDVLNPRCKVVIAQFERLEQHHQQAGLN*

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