Scaffold JGI12630J15595_10041972

Overview

Basic Information

• Taxon OID: 3300001545
• Scaffold ID: JGI12630J15595_10041972
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 926
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000739	Metagenome / Metatranscriptome	913	Y
F010188	Metagenome / Metatranscriptome	307	Y
F051385	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12630J15595_100419721	F010188	GGAG	MPVVGSSAYNTAGQITSLVRALLNDVQGNLFTDAVLLPYANSAYRKTQRALGNVGAGGFIQDDALLVVLAVTQMD
JGI12630J15595_100419722	F000739	GGAG	MMTRVELWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGATFRIGVAAALINAVIGVAAYLQKSPLPSGE*
JGI12630J15595_100419723	F051385	GAGG	MYGHNWLRIASGLALLFSSVIVVAQSLLRSEFSNQLYYGTTLIAVFGYLFLTSRTKEEERDSPWWW*