Scaffold JGI12630J15595_10006948

Overview

Basic Information

• Taxon OID: 3300001545
• Scaffold ID: JGI12630J15595_10006948
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2459
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12630J15595_100069483	F006952	GGAGG	VIGPLGTANHEIREAERRDLERRRALLSEPRRLTDQLLGQLEELNLDGVPIVPISYDPGLAEIRSHLVGWPGIGTRLLERLQSGTRTAELIETVFTIQEVIAPPTLPAGAVIFEEPDLV*
JGI12630J15595_100069484	F004349	AGGA	VKAKPRATLAVTVLMLAACGPTGNEAAKLPTASEILNKPDQANVKDAHFTLVAHIVSASVAFDATGDGAIVVKPAQASKFTMTTTIAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLKLGKAWHVKAKDASGSPFEAWVRESDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPPSDVQS*
JGI12630J15595_100069485	F004003	N/A	MAKLLRFLTAIAAAGLLAGCGGPGSPLGPPSPQDILAKPAHTSSLKDAHFLVSGKFTDNAKTVALAGDGALVYTSGSGRFKFQTTVAGQQVSFEDISVNGTDYSMTIPGSGKWVARASASALGPNSFAGASNFKYVGEETLSQGKAWHASAKDKDGNPFDAWIRESDGYPLKYVITQQGNTLTLTFDKYNTGQTITPPPASQVVKG*