NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24022J15233_10113086

Scaffold JGI24022J15233_10113086


Overview

Basic Information
Taxon OID3300001539 Open in IMG/M
Scaffold IDJGI24022J15233_10113086 Open in IMG/M
Source Dataset NameEcteinascidia turbinata endosymbiont from Florida, USA - Sample 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1999
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location
Location NameKey West, Florida, United States
CoordinatesLat. (o)24.5512Long. (o)-81.8083Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061343Metagenome132N
F067192Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
JGI24022J15233_101130861F067192N/ALIFFNSAHAKHSMDMETDSPHYELPTKIPKTAVQQYPSLYVKLHLTGLFDIQQAQSIIRSEPSMRRDAIPLLFKQMAFNLSFVAITEDEYVMINRTIRQILDWKPQKIPYLQLFVKNSLLRRAILNRASTIVSSFAELPPCCIGIRIKSNKEKEEYWQKHHVTALRRVVWNFILNELDPIPPHVRMFLSTELKLIATQETPTSPAISSHSQTMAHKK
JGI24022J15233_101130862F061343N/AMDLAQLCQILHKVSRTEENKENVPPSVPTASTEQPTQSNDQPVPHLWGWLHQQIPLIQDAVIKFSTNHSVINAYKFWEIDSDTYVVEHDYINTFIVKITFYQAIYLNHFQIPAITILVPSSDDQFKLLFKISTFIAKYEDLSPCVFHLQIQPETAPKPSHSALHTHKQIVSLILMNAPMLPKSVLTKMREFLVALEAITDKNPETTPPTNPVA*
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