Scaffold JGI24022J15233_10015696

Overview

Basic Information

• Taxon OID: 3300001539
• Scaffold ID: JGI24022J15233_10015696
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8754
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Malacostraca → Eumalacostraca → Eucarida → Decapoda → Pleocyemata → Brachyura → Eubrachyura → Heterotremata → Portunoidea → Portunidae → Portuninae → Portunus → Portunus trituberculatus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049282	Metagenome	147	Y
F096190	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24022J15233_100156968	F096190	GGA	MKRVCTPIAAHRRWLSKGVTDTVFWLSQSTDIFTKFNEVSLQLQGNDVNLIKAKSAISTFLSKFNGVQTKSSPS*
JGI24022J15233_100156969	F049282	GAG	MEWFNDHKYTNSLVRVQFESRKAISIFLQIVLGANKNKLPKGNRKDSGKQKCVLERTLA*