Scaffold JGI24022J15233_10002315

Overview

Basic Information

• Taxon OID: 3300001539
• Scaffold ID: JGI24022J15233_10002315
• Source Dataset Name: Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17670
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (43.75%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Ascidiacea → Phlebobranchia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata → Ecteinascidia Turbinata Symbiotic Microbial Communities From The Caribbean Mangrove

Source Dataset Sampling Location

• Location Name: Key West, Florida, United States
• Coordinates
  • Lat. (^o): 24.5512
  • Long. (^o): -81.8083
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079315	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24022J15233_1000231512	F079315	AGG	MFQERLSTPSIRYIKSDKLGQTNCDEFLDNFVMKKAGHKLFNCLLFYVQLYLIQ*