NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A10PFW1_10060256

Scaffold A10PFW1_10060256


Overview

Basic Information
Taxon OID3300001538 Open in IMG/M
Scaffold IDA10PFW1_10060256 Open in IMG/M
Source Dataset NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2557
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004437Metagenome / Metatranscriptome438Y
F092604Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
A10PFW1_100602563F004437GGAGMSLAKDPSEQAKRFIDASLQGRARRPSKTAYAKAIRLAREAIEELTLVARRARQSASR*
A10PFW1_100602565F092604N/AVLAILGASAALAGFVLVFLGVIIASYQSYSGGVPAQVVEPYRTVGGILLGAFGLCLVAVFVSLVWLVGGGPDQAYGATVGLFVAELVAVLAAAIWATRMVLWQ*

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