NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A3PFW1_10195978

Scaffold A3PFW1_10195978


Overview

Basic Information
Taxon OID3300001535 Open in IMG/M
Scaffold IDA3PFW1_10195978 Open in IMG/M
Source Dataset NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1631
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location NameAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016802Metagenome / Metatranscriptome244Y
F064235Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
A3PFW1_101959781F064235GGGGGMIALRGSIVQLRLELAESPAPAVALWELVGEQQRQTAMVLLAALIAQTVAPEAAGDEVASLGGASARGGRDD*
A3PFW1_101959782F016802AGGCGGMRWHRWEAQARVEDGMTEGLIDGSALQLVTVCLTNDGAGEVSDELGEPVIEAPVVSYLRPSAARELAFCLLELAELAERRTEGSK*

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