NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MLSed_10027427

Scaffold MLSed_10027427


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10027427 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4954
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001883Metagenome / Metatranscriptome622Y
F004366Metagenome / Metatranscriptome441Y
F016965Metagenome / Metatranscriptome243Y
F033725Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
MLSed_100274273F033725N/AMITILNREIPNQIEELTIEQFEAITDINNNQELDPIDKHLQVFAYLGIPESEFWDYDVADFVGMVRDFNSSEQKDYPTVEEIELEGYVYKAQLKLTVRDTKMIEKITIKKEKGYVSEMLAVMFKREDLTSAEHYADAHIKHKAKLIRKLNAAISIPYIMFIAKKISQQANDQITEAVESSNA*
MLSed_100274275F001883N/AMARYGNTGEFNVLYPTRRKMATILKRILRNDIVDGEGTLVESIRINAKITGFQKLEIQIVAMYYFIFLNNGAYLWNGGVITPRDYVAQFTDELNNAGITAEIYRQYTEWLTKKYPLIEAVEVLERQQRIVYTFEALDPPPGFTPGFPLDV*
MLSed_100274276F016965N/AMFEINGIEYTITGPIEVVSDTQLHVETDKGIILVDDTMEIYKALTNG*
MLSed_100274278F004366N/AMNSLQAIIDHIKLFYTNHLQVMKVGSDFKEQLFNFATQDEKYPIVFVVPVNVNPTENTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYYIGSNDFAFDVIGLPSFQALNNDLLDYAAGYVMNITLTVNDWTDCAVPL*
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Institute for Fundamental Biomedical Research
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