Scaffold MLSed_10023858

Overview

Basic Information

• Taxon OID: 3300001533
• Scaffold ID: MLSed_10023858
• Source Dataset Name: Benthic freshwater microbial communities from British Columbia, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4961
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021020	Metagenome / Metatranscriptome	221	Y
F034945	Metagenome / Metatranscriptome	173	Y
F042350	Metagenome / Metatranscriptome	158	Y
F076122	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSed_1002385815	F034945	AGGAG	MGDRANVGIRGSDGNTVYLYLHWGGSDRHETVAKALAHAMVRDGDESYFTRIFISRVIDTDWDKETGVGFSVNKLPAGGDGYDVPIYDYKKQTIGLYEESWDKAGGFVKFTDIEYPRDIYLAEFGVRGVGAYV*
MLSed_1002385816	F021020	AGGAG	MSNRITTNYDLNIWDRRGYETEYEEEGWSIEVYTYNCVGDAYGIGDYHSTITLTPTEAKRLTLGWGPDLGGDYTPDNDFWLDKETFLDTYTDIPERVANLLSALPEYRQSLEVAV*
MLSed_100238586	F076122	N/A	MEKQHEVVNKILEYLDTRRAELSNEMSSVAYQSSDYDALDAMYEVYDHLIAKLEDDYR*
MLSed_100238589	F042350	AGGAGG	MPGRESDYERGYIRGVAAMMNLISSDKVKSLDKRNVLQYARELVEAQKEKGNPYE*