Scaffold MLSed_10018640

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold MLSed_10018640

Scaffold MLSed_10018640

Overview

Basic Information
Taxon OID	3300001533 Open in IMG/M
Scaffold ID	MLSed_10018640 Open in IMG/M
Source Dataset Name	Benthic freshwater microbial communities from British Columbia, Canada
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6128
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location Name	British Columbia, Canada
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-119.583333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F101141	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
MLSed_100186402	F101141	AGG	MIEKPKKERRFLKALGRVGEILIQEVLLKVGSNLIKRIGGKKTLPSILFLFLSISLFAQFPNTGNKQRLTHGSFLIRLI*
MLSed_100186406	F001640	N/A	MRYLFLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAINNLVTDAERQSNTIAIHAKPIITKGKAVQRINYYNDLHVQISGKPVYFTTAQRDTAKFLGDWKLNFNGEIIDGVIQLNNNQRLIFNPDNSKVYSISTNLLLSTFTNQISFNFNGVKYDLYKYANGKFATVDGDVRLIKLE*

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