Scaffold MLSed_10016041

Overview

Basic Information

• Taxon OID: 3300001533
• Scaffold ID: MLSed_10016041
• Source Dataset Name: Benthic freshwater microbial communities from British Columbia, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10098
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031446	Metagenome / Metatranscriptome	182	Y
F043342	Metagenome / Metatranscriptome	156	Y
F043418	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSed_100160413	F043342	AGGA	MEQAEQELTEFYEYLWGSEAVTEDPTYIYVPVEHEGTWTPYMFSWPRQKKAIVRHTLKWSATQANVFFSPALYKAAKPIKDNVLGSWSLWVDFDGNAPQEWDEDVAPKPTLVVQSSVEGHEHCYWKLSEFCDDIELLEDRNRALAYLMHADTSGWDADQILRPIRTTNQKRGKPVIVKEWER*
MLSed_100160414	F043418	AGGA	MALLADFGIDVNDIDIPTNELEDGIYDFEVGSVYVKNGSQAHPDRSWIIMEYIIGDTGLRKSELFELPQDPENMTDRETQRLGYYVSRLVDLGVPRDQVNDVDSEDLVGLRGTLQLYSQAGKGANAGKMYQNIKNVKVSKNSSAGSQPQPKSARKTNPFA*
MLSed_100160418	F031446	GGAG	VSKKDEFAGAWDEEWLEVNMMLYEPHQDDYTIIDVEKKGVGRPMAEPSDITDITSTGRKRAAMMYPIFKNMVCEWAGLKHAGGGVEPIIGCAGNIIQPTKGPDKGDRHHGPDKNVINNAPDNVHRICSPCHNRWHSKNNKYYGERPPADEPFLPLAEYEWQPHDSETKATEKEIEENEKWWAGNRELLANVSTE*