Scaffold MLSed_10009499

Overview

Basic Information

• Taxon OID: 3300001533
• Scaffold ID: MLSed_10009499
• Source Dataset Name: Benthic freshwater microbial communities from British Columbia, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15889
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015275	Metagenome / Metatranscriptome	256	Y
F015411	Metagenome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSed_1000949922	F015275	GAGG	MKAEYGFIDPGAIMGVVVSLIILAVGVFAFFVTLSEVSNVTDDENISSAVQNVSDTGNSVFNIIGIVLIIGAIMSIVGLVYNYVR*
MLSed_100094998	F015411	N/A	MKRRKGYGLKDGTQKGKKKGGRRRNYTKNCRHKK*