Scaffold MLSed_10003628

Overview

Basic Information

• Taxon OID: 3300001533
• Scaffold ID: MLSed_10003628
• Source Dataset Name: Benthic freshwater microbial communities from British Columbia, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14147
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (56.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046685	Metagenome	151	Y
F077915	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSed_1000362812	F046685	N/A	MQQQYIPQQQYQTLPVSSDELYANVIQEDKIKNIISQLDPENQLKEIEMRIRGYKKNVLTNEWERIDPDSPEPPKLLIMRFISYLSSVMNQNTTQSNLSEAQVNAIMKLVINYVGDELDSNAGLYNLENNYTERTRIGHIILNSVFFVLNRALNGQEAKRMWKAMSLNESFNDSNQNKNKFASALQFWK*
MLSed_100036283	F077915	AGGAG	MSYYTTPTGNETNGLYELFKFTSNNATNGLFWPIMLLVIWVVSFLAFKNYSTSRAWTFASFFCSILGIFLAVMDYISPKWMYLTIFMTVVGFVWLKLETR*